- University Hospital
- Affiliated Schools, Affiliated Kindergartens
- University Library
- Cancer Research Institute
- Nano Life Science Institute (WPI-NanoLSI)
- Nanomaterials Research Institute
- Advanced Manufacturing Technology Institute
- Advanced Mobility Research Institute
- Institute for the Study of Ancient Civilizations and Cultural Resources
- Institute of Nature and Environmental Technology
- On-Campus Joint-use Educational and Research Facilities
- On-Campus Joint-Use Facilities
- Health Service Center
- Emerging Media Initiative
- Frontier Science and Social Co-creation Initiative
- Institute for Promotion of Diversity and Inclusion
- International House
- Kakuma Guesthouse
- Tokyo Office
- Articulation Center for High School and University
- Center for Management of Teaching and Learning
- Center for Teaching Profession
- University Museum
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